qslibΒΆ
- qslib package
- Submodules
- qslib.base module
- qslib.cli module
- qslib.common module
- qslib.data module
FilterDataReadingFilterDataReading.cycleFilterDataReading.exposureFilterDataReading.filename_reading_stringFilterDataReading.filter_setFilterDataReading.from_file()FilterDataReading.plate_colsFilterDataReading.plate_fluorescenceFilterDataReading.plate_rowsFilterDataReading.plate_set_temperaturesFilterDataReading.plate_temperaturesFilterDataReading.pointFilterDataReading.set_temperaturesFilterDataReading.set_timestamp_by_quantdata()FilterDataReading.stageFilterDataReading.stepFilterDataReading.temperaturesFilterDataReading.timestampFilterDataReading.to_lineprotocol()FilterDataReading.well_fluorescenceFilterDataReading.well_set_temperaturesFilterDataReading.well_temperatures
FilterSetdf_from_readings()
- qslib.experiment module
AlreadyExistsCompleteErrorAlreadyExistsErrorAlreadyExistsWorkingErrorAlreadyStartedErrorExperimentExperiment.abort()Experiment.activeendtimeExperiment.activestarttimeExperiment.all_filtersExperiment.amplification_dataExperiment.analysis_resultExperiment.available_data()Experiment.change_protocol()Experiment.change_protocol_from_now()Experiment.createdtimeExperiment.data_for_sample()Experiment.filter_dataExperiment.filter_stringsExperiment.from_file()Experiment.from_machine()Experiment.from_machine_storage()Experiment.from_running()Experiment.from_uncollected()Experiment.get_status()Experiment.info()Experiment.info_html()Experiment.machineExperiment.modifiedtimeExperiment.multicomponent_dataExperiment.nameExperiment.num_zonesExperiment.pause_now()Experiment.plate_setupExperiment.plot_anneal_melt()Experiment.plot_over_time()Experiment.plot_protocol()Experiment.plot_temperatures()Experiment.protocolExperiment.raw_dataExperiment.resume()Experiment.root_dirExperiment.run()Experiment.runendtimeExperiment.runstarttimeExperiment.runstateExperiment.runtitle_safeExperiment.sample_wellsExperiment.save_file()Experiment.spec_major_versionExperiment.stop()Experiment.summary()Experiment.sync_from_machine()Experiment.temperaturesExperiment.welldataExperiment.writesoftware
MachineBusyErrorMachineErrorNotRunningError
- qslib.machine module
MachineMachine.abort_current_run()Machine.access_levelMachine.asdict()Machine.at_access()Machine.automaticMachine.blockMachine.connect()Machine.connectedMachine.connectionMachine.cover_lower()Machine.cover_positionMachine.current_run_nameMachine.define_protocol()Machine.disconnect()Machine.drawer_close()Machine.drawer_open()Machine.drawer_positionMachine.ensured_connection()Machine.get_access_level()Machine.get_running_protocol()Machine.hostMachine.list_files()Machine.list_runs_in_storage()Machine.load_run_from_storage()Machine.machine_status()Machine.max_access_levelMachine.passwordMachine.pause_current_run()Machine.pause_current_run_at_temperature()Machine.portMachine.powerMachine.read_dir_as_zip()Machine.read_file()Machine.restart_system()Machine.resume_current_run()Machine.run_command()Machine.run_command_bytes()Machine.run_command_to_ack()Machine.run_status()Machine.save_run_from_storage()Machine.set_access_level()Machine.sslMachine.statusMachine.stop_current_run()Machine.write_file()
- qslib.monitor module
CollectorCollector.compile_eds()Collector.docollect()Collector.handle_led()Collector.handle_msg()Collector.handle_run_msg()Collector.inject()Collector.ipdirCollector.matrix_announce()Collector.monitor()Collector.reliable_monitor()Collector.run_ip_path()Collector.setup_new_rundir()Collector.sync_completed()
ConfigInfluxConfigLEDStatusMachineConfigMachineStateMatrixConfigRunStateStateSyncConfigget_runinfo()index_to_filename_ref()
- qslib.monitor_cli module
- qslib.plate_setup module
PlateSetupPlateSetup.from_array()PlateSetup.from_machine()PlateSetup.from_platesetup_xml()PlateSetup.from_tsv()PlateSetup.get_descriptive_string()PlateSetup.get_wells()PlateSetup.plate_typePlateSetup.sample_wellsPlateSetup.samples_by_namePlateSetup.to_lineprotocol()PlateSetup.to_table()PlateSetup.update_xml()PlateSetup.well_samplePlateSetup.well_samples_as_array()
Sample
- qslib.processors module
- qslib.protocol module
CustomStepExposureHACFILTHoldHoldAndCollectProtoCommandProtocolProtocol.all_filtersProtocol.all_pointsProtocol.all_temperaturesProtocol.all_timesProtocol.check_compatible()Protocol.copy()Protocol.covertemperatureProtocol.dataframeProtocol.filtersProtocol.from_scpicommand()Protocol.from_xml()Protocol.fromdict()Protocol.info()Protocol.nameProtocol.plot_protocol()Protocol.postrunProtocol.prerunProtocol.runmodeProtocol.stageProtocol.stagesProtocol.to_scpicommand()Protocol.to_xml()Protocol.validate()Protocol.volume
RampStageStepStep.bodyStep.collectStep.collectsStep.duration_at_cycle()Step.filtersStep.from_scpicommand()Step.from_xml()Step.fromdict()Step.identifierStep.info_str()Step.pcrStep.quantStep.repeatStep.temp_incrementStep.temp_incrementcycleStep.temp_incrementpointStep.temperatureStep.temperature_listStep.temperatures_at_cycle()Step.tiffStep.timeStep.time_incrementStep.time_incrementcycleStep.time_incrementpointStep.to_xml()Step.total_duration()
XMLablecconvert_quantity_ndarray_to_scalar_if_all_equal()
- qslib.qs_is_protocol module
AccessLevelExceededAuthErrorCommandErrorErrorInsufficientAccessInvocationErrorNoMatchQS_IOErrorQS_IS_ProtocolQS_IS_Protocol.connection_lost()QS_IS_Protocol.connection_made()QS_IS_Protocol.data_received()QS_IS_Protocol.disconnect()QS_IS_Protocol.handle_sub_message()QS_IS_Protocol.last_receivedQS_IS_Protocol.lostconnectionQS_IS_Protocol.parse_message()QS_IS_Protocol.run_command()QS_IS_Protocol.waiting_commands
ReplyErrorSubHandlerUnparsedCommandError
- qslib.qsconnection_async module
AlreadyCollectedErrorFilterDataFilenameQSConnectionAsyncQSConnectionAsync.authenticate()QSConnectionAsync.compile_eds()QSConnectionAsync.connect()QSConnectionAsync.connectedQSConnectionAsync.disconnect()QSConnectionAsync.get_all_filterdata()QSConnectionAsync.get_exp_file()QSConnectionAsync.get_expfile_list()QSConnectionAsync.get_filterdata_one()QSConnectionAsync.get_run_start_time()QSConnectionAsync.get_run_title()QSConnectionAsync.get_sds_file()QSConnectionAsync.list_files()QSConnectionAsync.read_dir_as_zip()QSConnectionAsync.read_file()QSConnectionAsync.run_command()QSConnectionAsync.run_command_to_bytes()QSConnectionAsync.set_access_level()
RunNotFinishedError
- qslib.rawquant_compat module
- qslib.scpi_commands module
- qslib.version module
- Module contents
AccessLevelCustomStepExperimentExperiment.abort()Experiment.activeendtimeExperiment.activestarttimeExperiment.all_filtersExperiment.amplification_dataExperiment.analysis_resultExperiment.available_data()Experiment.change_protocol()Experiment.change_protocol_from_now()Experiment.createdtimeExperiment.data_for_sample()Experiment.filter_dataExperiment.filter_stringsExperiment.from_file()Experiment.from_machine()Experiment.from_machine_storage()Experiment.from_running()Experiment.from_uncollected()Experiment.get_status()Experiment.info()Experiment.info_html()Experiment.machineExperiment.modifiedtimeExperiment.multicomponent_dataExperiment.nameExperiment.num_zonesExperiment.pause_now()Experiment.plate_setupExperiment.plot_anneal_melt()Experiment.plot_over_time()Experiment.plot_protocol()Experiment.plot_temperatures()Experiment.protocolExperiment.raw_dataExperiment.resume()Experiment.root_dirExperiment.run()Experiment.runendtimeExperiment.runstarttimeExperiment.runstateExperiment.runtitle_safeExperiment.sample_wellsExperiment.save_file()Experiment.spec_major_versionExperiment.stop()Experiment.summary()Experiment.sync_from_machine()Experiment.temperaturesExperiment.userExperiment.welldataExperiment.writesoftware
MachineMachine.abort_current_run()Machine.access_levelMachine.asdict()Machine.at_access()Machine.automaticMachine.blockMachine.connect()Machine.connectedMachine.connectionMachine.cover_lower()Machine.cover_positionMachine.current_run_nameMachine.define_protocol()Machine.disconnect()Machine.drawer_close()Machine.drawer_open()Machine.drawer_positionMachine.ensured_connection()Machine.get_access_level()Machine.get_running_protocol()Machine.hostMachine.list_files()Machine.list_runs_in_storage()Machine.load_run_from_storage()Machine.machine_status()Machine.max_access_levelMachine.passwordMachine.pause_current_run()Machine.pause_current_run_at_temperature()Machine.portMachine.powerMachine.read_dir_as_zip()Machine.read_file()Machine.restart_system()Machine.resume_current_run()Machine.run_command()Machine.run_command_bytes()Machine.run_command_to_ack()Machine.run_status()Machine.save_run_from_storage()Machine.set_access_level()Machine.sslMachine.statusMachine.stop_current_run()Machine.write_file()
MachineStatusNormRawNormToMaxPerWellNormToMeanPerWellPlateSetupPlateSetup.from_array()PlateSetup.from_machine()PlateSetup.from_platesetup_xml()PlateSetup.from_tsv()PlateSetup.get_descriptive_string()PlateSetup.get_wells()PlateSetup.plate_typePlateSetup.sample_wellsPlateSetup.samples_by_namePlateSetup.to_lineprotocol()PlateSetup.to_table()PlateSetup.update_xml()PlateSetup.well_samplePlateSetup.well_samples_as_array()
ProtocolProtocol.all_filtersProtocol.all_pointsProtocol.all_temperaturesProtocol.all_timesProtocol.check_compatible()Protocol.copy()Protocol.covertemperatureProtocol.dataframeProtocol.filtersProtocol.from_scpicommand()Protocol.from_xml()Protocol.fromdict()Protocol.info()Protocol.nameProtocol.plot_protocol()Protocol.postrunProtocol.prerunProtocol.runmodeProtocol.stageProtocol.stagesProtocol.to_scpicommand()Protocol.to_xml()Protocol.validate()Protocol.volume
RunStatusSampleSmoothEMWMeanStageStepStep.bodyStep.collectStep.collectsStep.duration_at_cycle()Step.filtersStep.from_scpicommand()Step.from_xml()Step.fromdict()Step.identifierStep.info_str()Step.pcrStep.quantStep.repeatStep.temp_incrementStep.temp_incrementcycleStep.temp_incrementpointStep.temperatureStep.temperature_listStep.temperatures_at_cycle()Step.tiffStep.timeStep.time_incrementStep.time_incrementcycleStep.time_incrementpointStep.to_xml()Step.total_duration()