Index

A

abort() (qslib.common.Experiment method) (qslib.experiment.Experiment method) abort_current_run() (qslib.common.Machine method) (qslib.machine.Machine method) AccessLevel (class in qslib.base) activeendtime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) activestarttime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) Administrator (qslib.base.AccessLevel attribute)

all_points (qslib.common.Protocol property) (qslib.tcprotocol.Protocol property) all_temperatures (qslib.common.Protocol property) (qslib.tcprotocol.Protocol property) all_times (qslib.common.Protocol property) (qslib.tcprotocol.Protocol property) AlreadyExistsError at_access() (qslib.common.Machine method) (qslib.machine.Machine method) authenticate() (qslib.qsconnection_async.QSConnectionAsync method)

B

BaseStatus (class in qslib.base) BaseStep (class in qslib.tcprotocol)

body (qslib.common.Step property) (qslib.tcprotocol.BaseStep property) (qslib.tcprotocol.Step property)

C

change_protocol() (qslib.common.Experiment method) (qslib.experiment.Experiment method) check_compatible() (qslib.common.Protocol method) (qslib.tcprotocol.Protocol method) collect (qslib.common.Step attribute) (qslib.tcprotocol.Step attribute) collect_finished() (qslib.common.Experiment method) (qslib.experiment.Experiment method) Collector (class in qslib.monitor) color (qslib.plate_setup.Sample attribute) command (qslib.qs_is_protocol.CommandError attribute) CommandError connect() (qslib.common.Machine method) (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method) connection_lost() (qslib.qs_is_protocol.QS_IS_Protocol method) connection_made() (qslib.qs_is_protocol.QS_IS_Protocol method) Controller (qslib.base.AccessLevel attribute) copy() (qslib.common.Protocol method) (qslib.tcprotocol.Protocol method) cover (qslib.base.MachineStatus attribute) (qslib.common.MachineStatus attribute) (qslib.tcprotocol.Ramp attribute)

cover_control (qslib.monitor.MachineState attribute) cover_lower() (qslib.common.Machine method) (qslib.machine.Machine method) cover_position (qslib.common.Machine property) (qslib.machine.Machine property) cover_target (qslib.monitor.MachineState attribute) covertemperature (qslib.common.Protocol attribute) (qslib.tcprotocol.Protocol attribute) create_new_copy() (qslib.common.Experiment method) (qslib.experiment.Experiment method) createdtime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) current (qslib.experiment.MachineBusyError attribute) (qslib.experiment.NotRunningError attribute) current_run_name (qslib.common.Machine property) (qslib.machine.Machine property) cycle (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.monitor.RunState attribute)

D

data_for_sample() (qslib.common.Experiment method) (qslib.experiment.Experiment method) data_received() (qslib.qs_is_protocol.QS_IS_Protocol method) dataframe (qslib.common.Protocol property) (qslib.tcprotocol.Protocol property) dataframe() (qslib.common.Stage method) (qslib.tcprotocol.Stage method) define_protocol() (qslib.common.Machine method) (qslib.machine.Machine method) df_from_readings() (in module qslib.data) disconnect() (qslib.common.Machine method) (qslib.machine.Machine method) (qslib.qs_is_protocol.QS_IS_Protocol method) (qslib.qsconnection_async.QSConnectionAsync method)

docollect() (qslib.monitor.Collector method) drawer (qslib.base.MachineStatus attribute) (qslib.common.MachineStatus attribute) (qslib.monitor.MachineState attribute) drawer_close() (qslib.common.Machine method) (qslib.machine.Machine method) drawer_open() (qslib.common.Machine method) (qslib.machine.Machine method) drawer_position (qslib.common.Machine property) (qslib.machine.Machine property) duration_at_cycle() (qslib.common.Step method) (qslib.tcprotocol.Step method)

E

em (qslib.data.FilterSet attribute) Error ex (qslib.data.FilterSet attribute)

Experiment (class in qslib.common) (class in qslib.experiment) Exposure (class in qslib.tcprotocol) exposure (qslib.data.FilterDataReading attribute)

F

filename_reading_string (qslib.data.FilterDataReading property) filter_set (qslib.data.FilterDataReading attribute) filterdata (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) FilterDataReading (class in qslib.data) filters (qslib.common.Protocol attribute) (qslib.common.Step attribute) (qslib.tcprotocol.HACFILT attribute) (qslib.tcprotocol.Protocol attribute) (qslib.tcprotocol.Step attribute) FilterSet (class in qslib.data) from_bytes() (qslib.base.BaseStatus class method) from_command() (qslib.common.Protocol class method) (qslib.tcprotocol.Protocol class method) from_file() (qslib.common.Experiment class method) (qslib.experiment.Experiment class method) from_machine() (qslib.base.BaseStatus class method) (qslib.common.PlateSetup class method) (qslib.monitor.MachineState class method) (qslib.monitor.RunState class method) (qslib.monitor.State class method) (qslib.plate_setup.PlateSetup class method)

from_machine_storage() (qslib.common.Experiment class method) (qslib.experiment.Experiment class method) from_platesetup_sample() (qslib.plate_setup.Sample class method) from_platesetup_xml() (qslib.common.PlateSetup class method) (qslib.plate_setup.PlateSetup class method) from_running() (qslib.common.Experiment class method) (qslib.experiment.Experiment class method) from_uncollected() (qslib.common.Experiment class method) (qslib.experiment.Experiment class method) from_xml() (qslib.common.Protocol class method) (qslib.common.Stage class method) (qslib.common.Step class method) (qslib.tcprotocol.Protocol class method) (qslib.tcprotocol.Stage class method) (qslib.tcprotocol.Step class method) fromdict() (qslib.common.Protocol class method) (qslib.common.Stage class method) (qslib.common.Step class method) (qslib.tcprotocol.Protocol class method) (qslib.tcprotocol.Stage class method) (qslib.tcprotocol.Step class method) fromstring() (qslib.data.FilterSet class method) Full (qslib.base.AccessLevel attribute)

G

get_access_level() (qslib.common.Machine method) (qslib.machine.Machine method) get_all_filterdata() (qslib.qsconnection_async.QSConnectionAsync method) get_exp_file() (qslib.qsconnection_async.QSConnectionAsync method) get_expfile_list() (qslib.qsconnection_async.QSConnectionAsync method) get_file() (qslib.qsconnection_async.QSConnectionAsync method) get_filterdata_one() (qslib.qsconnection_async.QSConnectionAsync method) get_run_start_time() (qslib.qsconnection_async.QSConnectionAsync method)

get_run_title() (qslib.qsconnection_async.QSConnectionAsync method) get_runinfo() (in module qslib.monitor) get_running_protocol() (qslib.common.Machine method) (qslib.machine.Machine method) get_sds_file() (qslib.qsconnection_async.QSConnectionAsync method) get_status() (qslib.common.Experiment method) (qslib.experiment.Experiment method) Guest (qslib.base.AccessLevel attribute)

H

HACFILT (class in qslib.tcprotocol) hacform (qslib.data.FilterSet property) handle_led() (qslib.monitor.Collector method) handle_msg() (qslib.monitor.Collector method) handle_run_msg() (qslib.monitor.Collector method)

handle_sub_message() (qslib.qs_is_protocol.QS_IS_Protocol method) Hold (class in qslib.tcprotocol) HoldAndCollect (class in qslib.tcprotocol) host (qslib.common.Machine attribute) (qslib.experiment.MachineError attribute) (qslib.machine.Machine attribute)

I

identifier (qslib.common.Step property) (qslib.tcprotocol.BaseStep property) (qslib.tcprotocol.Step property) increment (qslib.tcprotocol.Hold attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Ramp attribute) incrementcycle (qslib.tcprotocol.Hold attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Ramp attribute) incrementstep (qslib.tcprotocol.Hold attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Ramp attribute)

index (qslib.common.Stage attribute) (qslib.tcprotocol.Stage attribute) index_to_filename_ref() (in module qslib.monitor) info_str() (qslib.common.Stage method) (qslib.common.Step method) (qslib.tcprotocol.BaseStep method) (qslib.tcprotocol.Stage method) (qslib.tcprotocol.Step method) inject() (qslib.monitor.Collector method)

L

label (qslib.common.Stage attribute) (qslib.tcprotocol.Stage attribute) lamp_status (qslib.base.MachineStatus attribute) (qslib.common.MachineStatus attribute) list_files() (qslib.common.Machine method) (qslib.machine.Machine method)

list_runs_in_storage() (qslib.common.Machine method) (qslib.machine.Machine method) load_run_from_storage() (qslib.common.Machine method) (qslib.machine.Machine method) lowerform (qslib.data.FilterSet property)

M

Machine (class in qslib.common) (class in qslib.machine) machine (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) (qslib.experiment.MachineError attribute) (qslib.monitor.State attribute) machine_status() (qslib.common.Machine method) (qslib.machine.Machine method) MachineBusyError MachineError MachineState (class in qslib.monitor) MachineStatus (class in qslib.base) (class in qslib.common) main() (in module qslib.monitor_cli) make_multi_keyword() (in module qslib.parser) matrix_announce() (qslib.monitor.Collector method) max_access_level (qslib.common.Machine attribute) (qslib.machine.Machine attribute)

modifiedtime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) module qslib qslib.base qslib.cli qslib.common qslib.data qslib.experiment qslib.machine qslib.monitor qslib.monitor_cli qslib.parser qslib.plate_setup qslib.qs_is_protocol qslib.qsconnection_async qslib.tcprotocol qslib.util monitor() (qslib.monitor.Collector method)

N

name (qslib.base.RunStatus attribute) (qslib.common.Experiment attribute) (qslib.common.Protocol attribute) (qslib.common.RunStatus attribute) (qslib.experiment.Experiment attribute) (qslib.experiment.RunAlreadyExistsError attribute) (qslib.monitor.RunState attribute) (qslib.plate_setup.Sample attribute) (qslib.tcprotocol.Protocol attribute)

NotRunningError num_cycles (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) num_stages (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute)

O

Observer (qslib.base.AccessLevel attribute)

P

parse_args() (in module qslib.monitor_cli) parse_fd_fn() (in module qslib.monitor) parse_message() (qslib.qs_is_protocol.QS_IS_Protocol method) password (qslib.common.Machine attribute) (qslib.machine.Machine attribute) pause_current_run() (qslib.common.Machine method) (qslib.machine.Machine method) pause_current_run_at_temperature() (qslib.common.Machine method) (qslib.machine.Machine method) pause_now() (qslib.common.Experiment method) (qslib.experiment.Experiment method) pcr (qslib.common.Step attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Step attribute) plate_fluorescence (qslib.data.FilterDataReading property) plate_set_temperatures (qslib.data.FilterDataReading property) plate_setup (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) (qslib.monitor.RunState attribute)

plate_temperatures (qslib.data.FilterDataReading property) PlateSetup (class in qslib.common) (class in qslib.plate_setup) point (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) (qslib.data.FilterDataReading attribute) port (qslib.common.Machine attribute) (qslib.experiment.MachineError attribute) (qslib.machine.Machine attribute) power (qslib.common.Machine property) (qslib.machine.Machine property) Protocol (class in qslib.common) (class in qslib.tcprotocol) protocol (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) ProtoCommand (class in qslib.tcprotocol)

Q

QS_IS_Protocol (class in qslib.qs_is_protocol) QSConnectionAsync (class in qslib.qsconnection_async) qslib module qslib.base module qslib.cli module qslib.common module qslib.data module qslib.experiment module qslib.machine module qslib.monitor module

qslib.monitor_cli module qslib.parser module qslib.plate_setup module qslib.qs_is_protocol module qslib.qsconnection_async module qslib.tcprotocol module qslib.util module quant (qslib.common.Step attribute) (qslib.data.FilterSet attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Step attribute)

R

Ramp (class in qslib.tcprotocol) rate (qslib.tcprotocol.Ramp attribute) read_dir_as_zip() (qslib.common.Machine method) (qslib.machine.Machine method) read_file() (qslib.common.Machine method) (qslib.machine.Machine method) ref_index (qslib.qs_is_protocol.CommandError attribute) refresh() (qslib.monitor.MachineState method) (qslib.monitor.RunState method) reliable_monitor() (qslib.monitor.Collector method) repeat (qslib.common.Stage attribute) (qslib.common.Step property) (qslib.tcprotocol.BaseStep property) (qslib.tcprotocol.Stage attribute) (qslib.tcprotocol.Step property) ReplyError response (qslib.qs_is_protocol.CommandError attribute) resume() (qslib.common.Experiment method) (qslib.experiment.Experiment method) resume_current_run() (qslib.common.Machine method) (qslib.machine.Machine method) run (qslib.experiment.NotRunningError attribute) (qslib.monitor.State attribute) run() (in module qslib.monitor_cli) (qslib.common.Experiment method) (qslib.experiment.Experiment method)

run_command() (qslib.common.Machine method) (qslib.machine.Machine method) (qslib.qs_is_protocol.QS_IS_Protocol method) (qslib.qsconnection_async.QSConnectionAsync method) run_command_bytes() (qslib.common.Machine method) (qslib.machine.Machine method) run_command_to_ack() (qslib.common.Machine method) (qslib.machine.Machine method) run_command_to_bytes() (qslib.qsconnection_async.QSConnectionAsync method) run_status() (qslib.common.Machine method) (qslib.machine.Machine method) RunAlreadyExistsError runendtime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) runmode (qslib.common.Protocol attribute) (qslib.tcprotocol.Protocol attribute) runstarttime (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) RunState (class in qslib.monitor) runstate (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute) RunStatus (class in qslib.base) (class in qslib.common) runtitle_safe (qslib.common.Experiment property) (qslib.experiment.Experiment property)

S

Sample (class in qslib.plate_setup) sample_wells (qslib.common.Experiment property) (qslib.common.PlateSetup attribute) (qslib.experiment.Experiment property) (qslib.plate_setup.PlateSetup attribute) samples_by_name (qslib.common.PlateSetup attribute) (qslib.plate_setup.PlateSetup attribute) save_file() (qslib.common.Experiment method) (qslib.experiment.Experiment method) save_file_without_changes() (qslib.common.Experiment method) (qslib.experiment.Experiment method) save_run_from_storage() (qslib.common.Machine method) (qslib.machine.Machine method) set_access_level() (qslib.common.Machine method) (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method) set_temperatures (qslib.data.FilterDataReading attribute) set_timestamp_by_quantdata() (qslib.data.FilterDataReading method) settings (qslib.tcprotocol.Exposure attribute) setup_logging() (in module qslib.monitor_cli) Stage (class in qslib.common) (class in qslib.tcprotocol) stage (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.monitor.RunState attribute)

stages (qslib.common.Protocol attribute) (qslib.tcprotocol.Protocol attribute) State (class in qslib.monitor) state (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) (qslib.tcprotocol.Exposure attribute) statemsg() (qslib.monitor.RunState method) status (qslib.common.Machine property) (qslib.machine.Machine property) Step (class in qslib.common) (class in qslib.tcprotocol) step (qslib.base.RunStatus attribute) (qslib.common.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.monitor.RunState attribute) steps (qslib.common.Stage property) (qslib.tcprotocol.Stage property) stop() (qslib.common.Experiment method) (qslib.experiment.Experiment method) stop_current_run() (qslib.common.Machine method) (qslib.machine.Machine method) SubHandler (class in qslib.qs_is_protocol) summary() (qslib.common.Experiment method) (qslib.experiment.Experiment method) sync_from_machine() (qslib.common.Experiment method) (qslib.experiment.Experiment method)

T

tcplot() (qslib.common.Protocol method) (qslib.tcprotocol.Protocol method) temp_increment (qslib.common.Step attribute) (qslib.tcprotocol.Step attribute) temp_incrementcycle (qslib.common.Step attribute) (qslib.tcprotocol.Step attribute) temperature (qslib.common.Step attribute) (qslib.tcprotocol.Ramp attribute) (qslib.tcprotocol.Step attribute) temperature_list (qslib.common.Step property) (qslib.tcprotocol.Step property) temperatures (qslib.common.Experiment attribute) (qslib.data.FilterDataReading attribute) (qslib.experiment.Experiment attribute) temperatures_at_cycle() (qslib.common.Step method) (qslib.tcprotocol.Step method) tiff (qslib.common.Step attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Step attribute) time (qslib.common.Step attribute) (qslib.tcprotocol.Hold attribute) (qslib.tcprotocol.HoldAndCollect attribute) (qslib.tcprotocol.Step attribute) time_increment (qslib.common.Step attribute) (qslib.tcprotocol.Step attribute) time_incrementcycle (qslib.common.Step attribute) (qslib.tcprotocol.Step attribute) timestamp (qslib.data.FilterDataReading attribute) to_command() (qslib.common.Protocol method) (qslib.common.Stage method) (qslib.tcprotocol.BaseStep method) (qslib.tcprotocol.Exposure method) (qslib.tcprotocol.HACFILT method) (qslib.tcprotocol.Hold method) (qslib.tcprotocol.HoldAndCollect method) (qslib.tcprotocol.Protocol method) (qslib.tcprotocol.ProtoCommand method) (qslib.tcprotocol.Ramp method) (qslib.tcprotocol.Stage method)

to_lineprotocol() (qslib.common.PlateSetup method) (qslib.data.FilterDataReading method) (qslib.plate_setup.PlateSetup method) to_table() (qslib.common.PlateSetup method) (qslib.plate_setup.PlateSetup method) to_xml() (qslib.common.Protocol method) (qslib.common.Stage method) (qslib.common.Step method) (qslib.data.FilterSet method) (qslib.plate_setup.Sample method) (qslib.tcprotocol.Protocol method) (qslib.tcprotocol.Stage method) (qslib.tcprotocol.Step method) (qslib.tcprotocol.XMLable method) total_duration() (qslib.common.Step method) (qslib.tcprotocol.Step method) tunnel_host (qslib.common.Machine attribute) (qslib.machine.Machine attribute) tunnel_key (qslib.common.Machine attribute) (qslib.machine.Machine attribute) tunnel_user (qslib.common.Machine attribute) (qslib.machine.Machine attribute)

U

update_xml() (qslib.common.PlateSetup method) (qslib.plate_setup.PlateSetup method)

upperform (qslib.data.FilterSet property) uuid (qslib.plate_setup.Sample attribute)

V

volume (qslib.common.Protocol attribute) (qslib.tcprotocol.Protocol attribute)

W

well_fluorescence (qslib.data.FilterDataReading attribute) well_sample (qslib.common.PlateSetup property) (qslib.plate_setup.PlateSetup property) well_samples_as_array() (qslib.common.PlateSetup method) (qslib.plate_setup.PlateSetup method) well_set_temperatures (qslib.data.FilterDataReading property)

well_temperatures (qslib.data.FilterDataReading property) welldata (qslib.common.Experiment property) (qslib.experiment.Experiment property) write_file() (qslib.common.Machine method) (qslib.machine.Machine method) writesoftware (qslib.common.Experiment attribute) (qslib.experiment.Experiment attribute)

X

XMLable (class in qslib.tcprotocol)

Z

zone_controls (qslib.monitor.MachineState attribute)

zone_targets (qslib.monitor.MachineState attribute)