Index

A

abort() (qslib.experiment.Experiment method) abort_current_run() (qslib.machine.Machine method) access_level (qslib.machine.Machine property) AccessLevel (class in qslib.scpi_commands) AccessLevelExceeded accessLimit (qslib.qs_is_protocol.AccessLevelExceeded attribute) activeendtime (qslib.experiment.Experiment attribute) activestarttime (qslib.experiment.Experiment attribute) adjust (qslib.processors.SmoothEMWMean attribute) Administrator (qslib.scpi_commands.AccessLevel attribute) all_filters (qslib.experiment.Experiment property) (qslib.protocol.Protocol property) all_points (qslib.protocol.Protocol property)

all_temperatures (qslib.protocol.Protocol property) all_times (qslib.protocol.Protocol property) alpha (qslib.processors.SmoothEMWMean attribute) AlreadyCollectedError AlreadyExistsError ArgList (class in qslib.scpi_commands) args (qslib.scpi_commands.ArgList attribute) (qslib.scpi_commands.SCPICommand attribute) asdict() (qslib.machine.Machine method) at_access() (qslib.machine.Machine method) authenticate() (qslib.qsconnection_async.QSConnectionAsync method) AuthError automatic (qslib.machine.Machine attribute)

B

BaseStatus (class in qslib.base)

body (qslib.protocol.CustomStep property) (qslib.protocol.Step property)

C

c (in module qslib.protocol) center (qslib.processors.SmoothWindowMean attribute) change_protocol() (qslib.experiment.Experiment method) change_protocol_from_now() (qslib.experiment.Experiment method) check_compatible() (qslib.protocol.Protocol method) closed (qslib.processors.SmoothWindowMean attribute) collect (qslib.protocol.Step attribute) collects (qslib.protocol.CustomStep property) (qslib.protocol.Step property) color (qslib.plate_setup.Sample attribute) com (qslib.processors.SmoothEMWMean attribute) command (qslib.qs_is_protocol.AccessLevelExceeded attribute) (qslib.qs_is_protocol.AuthError attribute) (qslib.qs_is_protocol.InsufficientAccess attribute) (qslib.qs_is_protocol.InvocationError attribute) (qslib.qs_is_protocol.NoMatch attribute) (qslib.qs_is_protocol.UnparsedCommandError attribute) (qslib.scpi_commands.SCPICommand attribute) CommandError comment (qslib.scpi_commands.SCPICommand attribute) compile_eds() (qslib.qsconnection_async.QSConnectionAsync method) connect() (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method)

connected (qslib.machine.Machine property) (qslib.qsconnection_async.QSConnectionAsync property) connection (qslib.machine.Machine property) connection_lost() (qslib.qs_is_protocol.QS_IS_Protocol method) connection_made() (qslib.qs_is_protocol.QS_IS_Protocol method) Controller (qslib.scpi_commands.AccessLevel attribute) convert_quantity_ndarray_to_scalar_if_all_equal() (in module qslib.protocol) copy() (qslib.protocol.Protocol method) cover (qslib.base.MachineStatus attribute) (qslib.protocol.Ramp attribute) cover_lower() (qslib.machine.Machine method) cover_position (qslib.machine.Machine property) covertemperature (qslib.protocol.Protocol attribute) createdtime (qslib.experiment.Experiment attribute) current (qslib.experiment.MachineBusyError attribute) (qslib.experiment.NotRunningError attribute) current_run_name (qslib.machine.Machine property) currentAccess (qslib.qs_is_protocol.InsufficientAccess attribute) CustomStep (class in qslib.protocol) cycle (qslib.base.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.qsconnection_async.FilterDataFilename attribute)

D

data_for_sample() (qslib.experiment.Experiment method) data_received() (qslib.qs_is_protocol.QS_IS_Protocol method) dataframe (qslib.protocol.Protocol property) dataframe() (qslib.protocol.Stage method) define_protocol() (qslib.machine.Machine method) description (qslib.plate_setup.Sample attribute) df_from_readings() (in module qslib.data) disconnect() (qslib.machine.Machine method) (qslib.qs_is_protocol.QS_IS_Protocol method) (qslib.qsconnection_async.QSConnectionAsync method)

drawer (qslib.base.MachineStatus attribute) drawer_close() (qslib.machine.Machine method) drawer_open() (qslib.machine.Machine method) drawer_position (qslib.machine.Machine property) duration_at_cycle() (qslib.protocol.CustomStep method) (qslib.protocol.Step method)

E

em (qslib.data.FilterSet attribute) ensured_connection() (qslib.machine.Machine method) Error

ex (qslib.data.FilterSet attribute) Experiment (class in qslib.experiment) Exposure (class in qslib.protocol) exposure (qslib.data.FilterDataReading attribute)

F

filename_reading_string (qslib.data.FilterDataReading property) filter_set (qslib.data.FilterDataReading attribute) filter_strings (qslib.experiment.Experiment property) filterdata (qslib.experiment.Experiment property) FilterDataFilename (class in qslib.qsconnection_async) FilterDataReading (class in qslib.data) filters (qslib.protocol.HACFILT attribute) (qslib.protocol.Protocol attribute) (qslib.protocol.Step attribute) FilterSet (class in qslib.data) filterset (qslib.qsconnection_async.FilterDataFilename attribute) from_array() (qslib.plate_setup.PlateSetup class method) from_bytes() (qslib.base.BaseStatus class method) from_file() (qslib.data.FilterDataReading class method) (qslib.experiment.Experiment class method) from_machine() (qslib.base.BaseStatus class method) (qslib.experiment.Experiment class method) (qslib.plate_setup.PlateSetup class method) from_machine_storage() (qslib.experiment.Experiment class method) from_platesetup_sample() (qslib.plate_setup.Sample class method) from_platesetup_xml() (qslib.plate_setup.PlateSetup class method) from_running() (qslib.experiment.Experiment class method) from_scpicommand() (qslib.protocol.CustomStep class method) (qslib.protocol.Exposure class method) (qslib.protocol.HACFILT class method) (qslib.protocol.Hold class method) (qslib.protocol.HoldAndCollect class method) (qslib.protocol.Protocol class method) (qslib.protocol.ProtoCommand class method) (qslib.protocol.Ramp class method) (qslib.protocol.Stage class method) (qslib.protocol.Step class method) (qslib.scpi_commands.SCPICommand class method) (qslib.scpi_commands.SCPICommandLike class method)

from_string() (qslib.scpi_commands.ArgList class method) (qslib.scpi_commands.SCPICommand class method) from_tsv() (qslib.plate_setup.PlateSetup class method) from_uncollected() (qslib.experiment.Experiment class method) from_xml() (qslib.protocol.Protocol class method) (qslib.protocol.Stage class method) (qslib.protocol.Step class method) fromdict() (qslib.protocol.Protocol class method) (qslib.protocol.Stage class method) (qslib.protocol.Step class method) fromstring() (qslib.data.FilterSet class method) (qslib.qsconnection_async.FilterDataFilename class method) Full (qslib.scpi_commands.AccessLevel attribute)

G

get_access_level() (qslib.machine.Machine method) get_all_filterdata() (qslib.qsconnection_async.QSConnectionAsync method) get_descriptive_string() (qslib.plate_setup.PlateSetup method) get_exp_file() (qslib.qsconnection_async.QSConnectionAsync method) get_expfile_list() (qslib.qsconnection_async.QSConnectionAsync method) get_filterdata_one() (qslib.qsconnection_async.QSConnectionAsync method)

get_run_start_time() (qslib.qsconnection_async.QSConnectionAsync method) get_run_title() (qslib.qsconnection_async.QSConnectionAsync method) get_running_protocol() (qslib.machine.Machine method) get_sds_file() (qslib.qsconnection_async.QSConnectionAsync method) get_status() (qslib.experiment.Experiment method) get_wells() (qslib.plate_setup.PlateSetup method) Guest (qslib.scpi_commands.AccessLevel attribute)

H

HACFILT (class in qslib.protocol) hacform (qslib.data.FilterSet property) halflife (qslib.processors.SmoothEMWMean attribute) handle_sub_message() (qslib.qs_is_protocol.QS_IS_Protocol method) Hold (class in qslib.protocol)

hold_at() (qslib.protocol.Stage class method) hold_for() (qslib.protocol.Stage class method) HoldAndCollect (class in qslib.protocol) host (qslib.experiment.MachineError attribute) (qslib.machine.Machine attribute)

I

identifier (qslib.protocol.CustomStep property) (qslib.protocol.Step property) ignore_na (qslib.processors.SmoothEMWMean attribute) increment (qslib.protocol.Hold attribute) (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Ramp attribute) incrementcycle (qslib.protocol.Hold attribute) (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Ramp attribute) incrementstep (qslib.protocol.Hold attribute) (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Ramp attribute)

index (qslib.protocol.Stage attribute) info() (qslib.experiment.Experiment method) (qslib.protocol.Protocol method) info_html() (qslib.experiment.Experiment method) info_str() (qslib.protocol.CustomStep method) (qslib.protocol.Stage method) (qslib.protocol.Step method) InsufficientAccess InvocationError is_same_point() (qslib.qsconnection_async.FilterDataFilename method)

L

label (qslib.protocol.Stage attribute) lamp_status (qslib.base.MachineStatus attribute) last_received (qslib.qs_is_protocol.QS_IS_Protocol attribute) list_files() (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method)

list_runs_in_storage() (qslib.machine.Machine method) load_run_from_storage() (qslib.machine.Machine method) lostconnection (qslib.qs_is_protocol.QS_IS_Protocol attribute) lowerform (qslib.data.FilterSet property)

M

Machine (class in qslib.machine) machine (qslib.experiment.Experiment attribute) (qslib.experiment.MachineError attribute) machine_status() (qslib.machine.Machine method) MachineBusyError MachineError MachineStatus (class in qslib.base) max_access_level (qslib.machine.Machine property) message (qslib.qs_is_protocol.AccessLevelExceeded attribute) (qslib.qs_is_protocol.AuthError attribute) (qslib.qs_is_protocol.InsufficientAccess attribute) (qslib.qs_is_protocol.InvocationError attribute) (qslib.qs_is_protocol.NoMatch attribute) min_periods (qslib.processors.SmoothEMWMean attribute) (qslib.processors.SmoothWindowMean attribute)

modifiedtime (qslib.experiment.Experiment attribute) module qslib.base qslib.data qslib.experiment qslib.machine qslib.plate_setup qslib.processors qslib.protocol qslib.qs_is_protocol qslib.qsconnection_async qslib.rawquant_compat qslib.scpi_commands qslib.version

N

name (qslib.base.RunStatus attribute) (qslib.experiment.AlreadyExistsError attribute) (qslib.experiment.Experiment attribute) (qslib.plate_setup.Sample attribute) (qslib.protocol.Protocol attribute) NoMatch

NormRaw (class in qslib.processors) NormToMaxPerWell (class in qslib.processors) NormToMeanPerWell (class in qslib.processors) NotRunningError num_cycles (qslib.base.RunStatus attribute) num_stages (qslib.base.RunStatus attribute) num_zones (qslib.experiment.Experiment attribute)

O

Observer (qslib.scpi_commands.AccessLevel attribute)

opts (qslib.scpi_commands.ArgList attribute) (qslib.scpi_commands.SCPICommand attribute)

P

parse() (qslib.qs_is_protocol.AccessLevelExceeded class method) (qslib.qs_is_protocol.AuthError class method) (qslib.qs_is_protocol.CommandError static method) (qslib.qs_is_protocol.InsufficientAccess class method) (qslib.qs_is_protocol.InvocationError class method) (qslib.qs_is_protocol.NoMatch class method) parse_message() (qslib.qs_is_protocol.QS_IS_Protocol method) password (qslib.machine.Machine attribute) pause_current_run() (qslib.machine.Machine method) pause_current_run_at_temperature() (qslib.machine.Machine method) pause_now() (qslib.experiment.Experiment method) pcr (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Step attribute) plate_fluorescence (qslib.data.FilterDataReading property) plate_set_temperatures (qslib.data.FilterDataReading property) plate_setup (qslib.experiment.Experiment attribute) plate_temperatures (qslib.data.FilterDataReading property) PlateSetup (class in qslib.plate_setup) plot_anneal_melt() (qslib.experiment.Experiment method) plot_over_time() (qslib.experiment.Experiment method) plot_protocol() (qslib.experiment.Experiment method) (qslib.protocol.Protocol method) plot_temperatures() (qslib.experiment.Experiment method) point (qslib.base.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.qsconnection_async.FilterDataFilename attribute)

port (qslib.experiment.MachineError attribute) (qslib.machine.Machine attribute) postrun (qslib.protocol.Protocol attribute) power (qslib.machine.Machine property) prerun (qslib.protocol.Protocol attribute) process() (qslib.processors.NormRaw method) (qslib.processors.NormToMaxPerWell method) (qslib.processors.NormToMeanPerWell method) (qslib.processors.Processor method) (qslib.processors.SmoothEMWMean method) (qslib.processors.SmoothWindowMean method) (qslib.processors.SubtractByMeanPerWell method) process_scoped() (qslib.processors.NormRaw method) (qslib.processors.NormToMaxPerWell method) (qslib.processors.NormToMeanPerWell method) (qslib.processors.Processor method) (qslib.processors.SmoothEMWMean method) (qslib.processors.SmoothWindowMean method) (qslib.processors.SubtractByMeanPerWell method) Processor (class in qslib.processors) properties (qslib.plate_setup.Sample attribute) Protocol (class in qslib.protocol) protocol (qslib.experiment.Experiment attribute) ProtoCommand (class in qslib.protocol)

Q

QS_IS_Protocol (class in qslib.qs_is_protocol) QSConnectionAsync (class in qslib.qsconnection_async) qslib.base module qslib.data module qslib.experiment module qslib.machine module qslib.plate_setup module qslib.processors module

qslib.protocol module qslib.qs_is_protocol module qslib.qsconnection_async module qslib.rawquant_compat module qslib.scpi_commands module qslib.version module quant (qslib.data.FilterSet attribute) (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Step attribute)

R

Ramp (class in qslib.protocol) rate (qslib.protocol.Ramp attribute) rawdata (qslib.experiment.Experiment property) read_dir_as_zip() (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method) read_file() (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method) ref_index (qslib.qs_is_protocol.UnparsedCommandError attribute) repeat (qslib.protocol.CustomStep attribute) (qslib.protocol.Stage attribute) (qslib.protocol.Step attribute) ReplyError requiredAccess (qslib.qs_is_protocol.InsufficientAccess attribute) response (qslib.qs_is_protocol.UnparsedCommandError attribute) restart_system() (qslib.machine.Machine method) resume() (qslib.experiment.Experiment method)

resume_current_run() (qslib.machine.Machine method) run (qslib.experiment.NotRunningError attribute) run() (qslib.experiment.Experiment method) run_command() (qslib.machine.Machine method) (qslib.qs_is_protocol.QS_IS_Protocol method) (qslib.qsconnection_async.QSConnectionAsync method) run_command_bytes() (qslib.machine.Machine method) run_command_to_ack() (qslib.machine.Machine method) run_command_to_bytes() (qslib.qsconnection_async.QSConnectionAsync method) run_status() (qslib.machine.Machine method) runendtime (qslib.experiment.Experiment attribute) runmode (qslib.protocol.Protocol attribute) RunNotFinishedError runstarttime (qslib.experiment.Experiment attribute) runstate (qslib.experiment.Experiment attribute) RunStatus (class in qslib.base) runtitle_safe (qslib.experiment.Experiment property)

S

Sample (class in qslib.plate_setup) sample_wells (qslib.experiment.Experiment property) (qslib.plate_setup.PlateSetup property) samples_by_name (qslib.plate_setup.PlateSetup attribute) save_file() (qslib.experiment.Experiment method) save_file_without_changes() (qslib.experiment.Experiment method) save_run_from_storage() (qslib.machine.Machine method) scope (qslib.processors.NormToMaxPerWell attribute) (qslib.processors.NormToMeanPerWell attribute) (qslib.processors.SmoothEMWMean attribute) (qslib.processors.SmoothWindowMean attribute) (qslib.processors.SubtractByMeanPerWell attribute) SCPICommand (class in qslib.scpi_commands) SCPICommandLike (class in qslib.scpi_commands) selection (qslib.processors.NormToMaxPerWell attribute) (qslib.processors.NormToMeanPerWell attribute) (qslib.processors.SubtractByMeanPerWell attribute) set_access_level() (qslib.machine.Machine method) (qslib.qsconnection_async.QSConnectionAsync method) set_temperatures (qslib.data.FilterDataReading attribute) set_timestamp_by_quantdata() (qslib.data.FilterDataReading method) settings (qslib.protocol.Exposure attribute) SmoothEMWMean (class in qslib.processors) SmoothWindowMean (class in qslib.processors)

span (qslib.processors.SmoothEMWMean attribute) specialize() (qslib.scpi_commands.SCPICommand method) Stage (class in qslib.protocol) stage (qslib.base.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.protocol.Protocol property) (qslib.qsconnection_async.FilterDataFilename attribute) stages (qslib.protocol.Protocol attribute) state (qslib.base.RunStatus attribute) (qslib.protocol.Exposure attribute) status (qslib.machine.Machine property) Step (class in qslib.protocol) step (qslib.base.RunStatus attribute) (qslib.data.FilterDataReading attribute) (qslib.protocol.Stage property) (qslib.qsconnection_async.FilterDataFilename attribute) stepped_ramp() (qslib.protocol.Stage class method) steps (qslib.protocol.Stage attribute) stop() (qslib.experiment.Experiment method) stop_current_run() (qslib.machine.Machine method) SubHandler (class in qslib.qs_is_protocol) SubtractByMeanPerWell (class in qslib.processors) summary() (qslib.experiment.Experiment method) sync_from_machine() (qslib.experiment.Experiment method)

T

temp_increment (qslib.protocol.Step attribute) temp_incrementcycle (qslib.protocol.Step attribute) temp_incrementpoint (qslib.protocol.Step attribute) temperature (qslib.protocol.Ramp attribute) (qslib.protocol.Step attribute) temperature_list (qslib.protocol.Step property) temperatures (qslib.data.FilterDataReading attribute) (qslib.experiment.Experiment attribute) temperatures_at_cycle() (qslib.protocol.CustomStep method) (qslib.protocol.Step method) tiff (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Step attribute) time (qslib.protocol.Hold attribute) (qslib.protocol.HoldAndCollect attribute) (qslib.protocol.Step attribute) time_increment (qslib.protocol.Step attribute) time_incrementcycle (qslib.protocol.Step attribute) time_incrementpoint (qslib.protocol.Step attribute) timestamp (qslib.data.FilterDataReading attribute) to_lineprotocol() (qslib.data.FilterDataReading method) (qslib.plate_setup.PlateSetup method)

to_scpicommand() (qslib.protocol.CustomStep method) (qslib.protocol.Exposure method) (qslib.protocol.HACFILT method) (qslib.protocol.Hold method) (qslib.protocol.HoldAndCollect method) (qslib.protocol.Protocol method) (qslib.protocol.ProtoCommand method) (qslib.protocol.Ramp method) (qslib.protocol.Stage method) (qslib.scpi_commands.SCPICommand method) (qslib.scpi_commands.SCPICommandLike method) to_string() (qslib.scpi_commands.SCPICommand method) to_table() (qslib.plate_setup.PlateSetup method) to_xml() (qslib.data.FilterSet method) (qslib.plate_setup.Sample method) (qslib.protocol.Protocol method) (qslib.protocol.Stage method) (qslib.protocol.Step method) (qslib.protocol.XMLable method) tostring() (qslib.qsconnection_async.FilterDataFilename method) total_duration() (qslib.protocol.CustomStep method) (qslib.protocol.Step method)

U

UnparsedCommandError update_xml() (qslib.plate_setup.PlateSetup method)

upperform (qslib.data.FilterSet property) uuid (qslib.plate_setup.Sample property)

V

value (qslib.scpi_commands.AccessLevel attribute)

volume (qslib.protocol.Protocol attribute)

W

waiting_commands (qslib.qs_is_protocol.QS_IS_Protocol attribute) well_fluorescence (qslib.data.FilterDataReading attribute) well_sample (qslib.plate_setup.PlateSetup property) well_samples_as_array() (qslib.plate_setup.PlateSetup method) well_set_temperatures (qslib.data.FilterDataReading property) well_temperatures (qslib.data.FilterDataReading property)

welldata (qslib.experiment.Experiment property) wells (qslib.plate_setup.Sample attribute) win_type (qslib.processors.SmoothWindowMean attribute) window (qslib.processors.SmoothWindowMean attribute) write_file() (qslib.machine.Machine method) writesoftware (qslib.experiment.Experiment attribute)

X

XMLable (class in qslib.protocol)

Y

ylabel() (qslib.processors.NormRaw method) (qslib.processors.NormToMaxPerWell method) (qslib.processors.NormToMeanPerWell method) (qslib.processors.Processor method) (qslib.processors.SmoothEMWMean method) (qslib.processors.SmoothWindowMean method) (qslib.processors.SubtractByMeanPerWell method)